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Tree Physiology

Oxford University Press (OUP)

Preprints posted in the last 90 days, ranked by how well they match Tree Physiology's content profile, based on 21 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

1
Phenotypic variability of hydraulic residual conductance and its temperature sensitivity in Abies alba

Herbette, S.; Andanson, s.; Gonzalez, A.; Blackmann, C. J.; cartailler, j.; martin, l.; Cochard, H.

2026-01-23 plant biology 10.64898/2026.01.22.700907 medRxiv
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Residual water losses after stomatal closure have recently been identified as key determinants of drought-induced hydraulic failure, particularly under heatwave conditions. However, little is known about the intraspecific variability of residual conductance (gres) and its thermal sensitivity. Here, we investigated the genetic and environmental sources of variation in gres and its associated thermal parameters (phase transition temperature T_, and temperature sensitivities Q10a and Q10b) in Abies alba Mill., together with vulnerability to xylem embolism (P50). Measurements were performed using the Drought-Box on seven French provenances grown in a common garden to assess genetic variability, and on trees growing across contrasting forest sites to quantify phenotypic plasticity. Seasonal dynamics and within-canopy microclimatic effects were also examined, and linked to needle biochemical traits. Residual conductance exhibited a marked seasonal decline, with high values in newly formed needles followed by a stabilization from late summer to the following spring, closely tracking the accumulation of cuticular waxes. In contrast, Klason lignin content showed little seasonal variation. Difference between provenances was weak for all investigated parameters, suggesting strong constraints on these safety-related traits. By contrast, gres showed significant environmental plasticity, with lower values at more climatically constrained sites, while thermal parameters and P50 remained relatively conserved. Our results identify gres as a developmentally dynamic and environmentally plastic trait in silver fir, potentially representing a key lever of acclimation to drought. Incorporating such variability into mechanistic models should improve predictions of tree vulnerability under future climates combining intensified droughts and heatwaves. Key message.Residual conductance in Abies alba is developmentally dynamic and environmentally plastic but genetically constrained, highlighting its key role in acclimation to drought and heatwave-driven hydraulic failure.

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Deep soil water as a dominant source for spruce water uptake in a subalpine forest: evidence from multi-year isotope data

Beria, H.; Shekhar, A.; Buchmann, N.; Gharun, M.

2026-03-11 plant biology 10.64898/2026.03.10.710581 medRxiv
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- Norway spruce (Picea abies) dominates many European mountain forests, yet their seasonal water uptake strategies in high-elevation mono-specific natural stands remain poorly understood. We quantified contributions of shallow (0-10 cm) and deep (50-70 cm) soil layers to tree water uptake over three consecutive growing seasons (2020-2022) using stable water isotopes and Bayesian mixing analysis. - Contrary to the prevailing view of spruce as a shallow-rooted species relying primarily on water from the upper 10-20 cm of soil, our results showed more than 50% water uptake from deeper soil (50-70 cm), with deeper soil contributions crossing 80% in 2020. - During the dry and warm summer of 2022, positive soil recharge and elevated atmospheric demand increased evapotranspiration, with spruce trees taking up recently infiltrated rainfall from different soil depths, including >50% uptake from deeper layers. - Spruce water uptake shifted from cold-season-recharged soil water early in the growing season to warm-season precipitation in late summer. The timing of this shift in mid-summer can be explained by soil water recharge from recent rainfall infiltrated into the entire soil profile. This reliance on summer precipitation increases vulnerability of mono-specific spruce stands to more frequent droughts and heat waves under future climate change.

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Stem photosynthesis is coordinated with seasonal growth activity in two temperate tree species

Jupa, R.; Harudova, E.; Plavcova, L.; Plichta, R.

2026-03-03 plant biology 10.64898/2026.02.28.708753 medRxiv
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Woody stems conduct both photosynthetic assimilation and respiration. The two processes work in concert, as stem photosynthesis helps refix CO2 released by stem respiration, thereby increasing carbon-use efficiency and generating a local pool of non-structural carbohydrates supporting cambial growth and stem hydraulic function. Despite its importance, little is known about seasonal variation in stem photosynthesis and the factors underlying its activity throughout the season. To fill this gap, we measured stem gas exchange together with growth activity, water status and photosynthetic pigment contents in two temperate species, Acer platanoides L. and Prunus avium L., over the season. In both species, gross photosynthetic rates (Pg) and dark respiration (Rd) changed significantly over the season in a similar pattern, indicating strong coordination between the two processes. Both Pg and Rd reached the highest values in May, during the period of rapid leaf expansion and secondary growth, and declined later in the growing season. At each measurement date, Rd exceeded Pg, resulting in a net CO2 efflux from the stems. The seasonal changes in Pg and Rd translated into seasonal variability in relative refixation of CO2, ranging from 3 to 59% and gradually decreasing towards the end of the season. Additionally, the Pg corresponded with the tissue hydration and increased significantly with increasing stem water potential. In contrast, total chlorophyll content showed less pronounced seasonal variation and thus explained substantially lower seasonal variability in Pg, except for the chlorophyll a/b ratio, which changed dynamically over the season and reached a minimum during the peak of the growing season. Overall, our results reveal that stem photosynthesis varies seasonally in accord with stem growth and water status, while the chlorophyll content has a lower impact on the seasonal changes. These findings are important for our understanding of the carbon relations of trees.

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Seasonal dynamics and sun/shade heterogeneity of leaf gas exchange and VOC emissions inside a tall temperate forest canopy

Dumberger, S.; Frey, Y.; Stock, C.; Wehlings-Schmitz, S.; Wagner, D.; Kuehnhammer, K.; Dedden, L.; Weiler, M.; Sulzer, M.; Christen, A.; Kreuzwieser, J.; Wallrabe, U.; Werner, C.; Haberstroh, S.

2026-01-23 plant biology 10.64898/2026.01.23.701264 medRxiv
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Leaf gas exchange is the key driver of forest carbon uptake and directly determines forest carbon sink activity. Additionally, plants release a variety of biogenic volatile organic compounds (VOCs) acting as stress signals of trees. However, continuous hourly resolved measurements of leaf gas exchange and VOC emissions in tall tree canopies are challenging and remain scarce. To this end, we developed a sophisticated in-situ leaf gas exchange measurement system with 24 cuvettes deployed on mature Fagus sylvatica (n=3) and Pseudotsuga menziesii (n=3) individuals in a mixed temperate forest. We additionally measured sap flux density (Js), radial growth and tree water deficit (TWD) to gain a holistic picture of seasonal leaf and stem water and carbon flux dynamics during the summer of 2024. During midsummer, we found a gradual reduction of stomatal conductance (gs) and VOC emissions of sun, but not shade branchlets of P. menziesii in response to moderate atmospheric and edaphic drying. Decreased gs led to a downregulation of transpiration (E), Js, and carbon isotope discrimination accompanied by an increase in TWD and intrinsic water used efficiency. Leaf gas exchange of shade branchlets remained unaffected due to microclimatic buffering effects. Contrarily, sun leaves of F. sylvatica, profited from sunny midsummer conditions and increased leaf gas exchange, whereas shade leaves benefitted from more diffuse light during early summer exhibiting similar carbon assimilation, transpiration and VOC emissions as sun leaves. For both species we found a clear time lag of four to five hours between maximum leaf and stem water fluxes and a delay of up to 20 hours for the recovery of TWD, highlighting the role of stem water reserves. Pronounced seasonal and diurnal differences of leaf gas exchange, stem water fluxes and VOC emissions showed, that continuous data are essential to better understand variability of ecosystem flux dynamics.

5
Seasonal Dynamics of Nonstructural Carbon Compounds in Pine Forest

Sarpong, C. K.; Nkrumah, M. K.; Baniya, B.; Kim, D.; Noormets, A.

2026-03-08 physiology 10.64898/2026.03.05.709835 medRxiv
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Non-structural carbon compounds (NSCs) serve to buffer short-term imbalances between carbon supply and demand in trees; however, their seasonal dynamics throughout the entire tree remain inadequately understood. We quantified year-round non-structural carbohydrate storage and fluxes in a temperate pine forest by integrating monthly measurements of soluble sugars, starch, and lipids across five tissues with biometric scaling to ecosystem stocks. Soluble sugars were consistently highest in canopy tissues and maintained a relatively stable concentration, even as sugar fluxes exhibited pronounced seasonal variations and reversals. In contrast, starch showed clear seasonality, increasing during the mid-growing season and decreasing later, whereas lipid pools remained relatively stable and contributed minimally to short-term fluctuations. Ecosystem-scale analyses indicated that sugars predominantly contributed to NSC turnover, accounting for approximately 80% of the total annual flux, while stored pools exhibited slower changes. The net annual NSC flux, approximately 65 g C m-2 yr-1, was relatively modest in comparison to biomass production, which totaled around 522g C m-2 yr -1. These findings indicate that seasonal changes in carbon balance are primarily driven by rapid redistribution of soluble carbon rather than by significant changes in overall NSC storage.

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PIP2;1 aquaporin promotes early stomatal closure in grapevine leaves during water stress

Albuquerque, C.; Momayyezi, M.; Aguero, C.; Arancibia, C.; Stanfield, R.; Ron, M.; Walker, A.; Bartlett, M. K.; Scoffoni, C.; McElrone, A. J.

2026-01-30 plant biology 10.64898/2026.01.29.702672 medRxiv
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Aquaporins play a key role in plant responses to drought. Our previous work showed limited embolism in grapevine leaves under mild water stress and suggested that the outside-xylem water pathway plays a dominant role in reducing leaf hydraulic conductance (Kleaf) during dehydration. We used CRISPR-Cas9 to knockout the PIP2;1 aquaporin encoding gene in Vitis vinifera cv. Chardonnay to study how leaf function during dehydration is affected by this aquaporin isoform. We measured functional responses like stomatal and photosynthetic responses as well as Kleaf to compare wild-type and two independent PIP2;1 knockout lines. Under moderate drought, mutants maintained greater stomatal conductance (gs) and photosynthetic rates as {Psi}w declined. No significant differences were observed in mesophyll conductance (gm) across genotypes, however, mutants exhibited slightly higher values under moderate drought. Interestingly, all lines exhibited similar Kleaf vulnerabilities to drought. Our findings show that PIP2;1 induces earlier stomatal closure during dehydration while not modulating Kleaf responses across genotypes. This rapid response in WT plants would prevent further water loss that would lead to higher xylem tensions that can lead to embolism. These findings show that multiple mechanisms collectively limit leaf gas exchange and water loss during dehydration, enhancing our understanding of plant resilience to changing environments.

7
Secondary Growth and Exodermal Barriers Shape Local Root Hydraulics: Modeling Insights in Tomato

D'Agostino, M.; Schoppach, R.; Heymans, A.; Couvreur, V.; Lobet, G.

2026-01-29 plant biology 10.64898/2026.01.27.701735 medRxiv
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Root water uptake efficiency depends on root system architecture and anatomical features of individual root segments. Beyond cell wall, membrane, and plasmodesmata hydraulic properties, root anatomy critically influences profiles of radial conductivity and axial conductance. While these structural factors have been well-characterized in monocotyledons, their role in dicotyledons--where developmental anatomy, secondary growth, and hydrophobic barrier dynamics differ--remains poorly understood. Here, we integrate structural and functional models to assess how dicotyledon-specific anatomy, hydrophobic depositions (suberin/lignin in exo-/endodermis), and aquaporin contribution influence root hydraulics. Using tomato (Solanum lycopersicum L., cv. Moneymaker) as a dicotyledon model, our simulations show that: - Exodermal suberin has negligible effects on radial conductivity when a lignin cap is present, and exodermal barriers are less effective than endodermal ones. - Secondary growth and dicotyledon-specific anatomy are essential for sustaining high axial conductance, ensuring efficient water uptake across soil profiles and maintaining root system hydraulic conductance.

8
Inferring somatic mutation dynamics from genomic variation across branches within long-lived tropical trees

Tomimoto, S.; Satake, A.

2026-04-04 evolutionary biology 10.64898/2026.04.02.716038 medRxiv
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Trees accumulate somatic mutations throughout their long lifespan, resulting in genetic mosaicism among branches. While recent genomic studies quantified these mutations, they were largely limited to describing static patterns of variation. In this study, we developed a mathematical model to infer the dynamic processes of somatic mutation accumulation from snapshot genomic data obtained from four tropical trees (Dipterocarpaceae), which dominate tropical rain forests in Southeast Asia. Our model focus on genetic differences between shoot apical meristems (SAMs) at branch tips and explicitly incorporate stem cell dynamics within SAMs during shoot elongation and branching, enabling us to quantify somatic genetic drift arising from stem cell lineage replacement. By comparing model predictions with empirical data from Dipterocarpaceae trees, we estimated key parameters governing stem cell dynamics and somatic mutation rates. Our results indicate that both shoot elongation and branching involve replacement of stem cell lineages, leading to a moderate degree of somatic genetic drift. Accounting for stem cell dynamics resulted in slightly lower mutation rate estimates than previous approaches that ignored these processes. Using the estimated parameters, we further performed stochastic simulations to predict patterns of somatic mutations, including features not directly observed in the sampled trees, such as occasional deviations of somatic mutation phylogenies from physical architecture. Together, our modeling framework provides insights into how genetic mosaicism is shaped within tropical trees and reveals the stem cell dynamics underlying their long-term growth and accumulation of somatic mutations. (236 words) Highlights- We built mathematical models to predict the genetic differences between branch tips by somatic mutations. - The model considers the varying dynamics of stem cells in shoot meristem during shoot elongation and branching. - We compared the model prediction with empirical data from tropical trees, Dipterocarpaceae, and estimated the dynamics of stem cells and mutation rate. - Somatic mutation dynamics were shaped by somatic genetic drift arising from stem cell lineage replacement during shoot elongation and branching. - Accounting for stem cell dynamics led to slightly smaller estimates of mutation rates compared with previous estimates that ignored the dynamics. - Our models offer insights into how genetic variability is shaped in the tropical trees and the stem cell dynamics underlying their long-term growth.

9
Stelar starch management tailors diurnal and rehydration-related water flows in Pinus pinea needles

Bork, P. A. R.; Gao, C.; Herfelt, E. T.; Schmeltz, M.; Bohr, T.; Schulz, A.

2026-03-06 plant biology 10.64898/2026.03.06.710090 medRxiv
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Pine needles contain two vascular cell types unique to gymnosperms: Transfusion parenchyma (tp) and tracheids (tt). Since they form the only connections between vascular bundles and bundle sheath, we hypothesised that they are involved in regulating the needles water import and photoassimilate export. Synchrotron-based tomography enabled us to quantify volume changes of tp and tt cells in Pinus pinea needles systematically along the needle and throughout a diurnal day cycle, as well as under rehydration. As a physiological indicator of tps carbohydrate status served their starch content. Segmentation of the comprehensive data uncovered dramatic volume changes during dehydration and showed a diurnal course of starch formation and degradation. These changes suggest a yet unknown osmotic water flux between tp and tt, balanced by the formers carbohydrate status. Confirming our hypothesis, excess of photoassimilates in tp cells went into starch synthesis during the day. Starch mobilisation during the night increased the osmotic potential in tp and led to water intake. According to the decreasing starch fraction from base to needle tip, this mechanism is predominant in the upper needle segments, particularly after rehydration of dehydrated needles. Mechanistically, osmolytes in tp cells maintain tension in tt for the needles water import. HighlightSynchrotron tomographic microscopy uncovers diurnal starch fluctuations and osmotic water pumping in inner tissues of pine needles that are utilised at night and when recovering from dehydration

10
Mature Citrus Leaves Undergo Coordinated Photosynthetic Downregulation to Support Flush-Driven Carbon and Nitrogen Sink Demand

Hussain, S. B.; Meng, Q.; Li, S.; Wang, Y.; Vincent, C. I.

2026-03-11 plant biology 10.64898/2026.03.09.710566 medRxiv
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The source{square}sink attenuation hypothesis suggests that plants regulate carbon fixation in response to fluctuations in sink demands. Many evergreen trees exhibit flushing growth patterns, where new shoot development generates a strong, transient demand for both carbon and nitrogen that may influence the function of mature leaves. This study examined the source-sink attenuation hypothesis in the context of vegetative sink growth by investigating the photosynthetic capacity and nitrogen dynamics in mature citrus leaves across three stages of flush development. In contrast to expectations, photosynthesis declined as flush growth progressed. Early flush initiation induced stomatal limitation in mature leaves, whereas as sink demand from further shoot growth continued carboxylation capacity and Rubisco abundance declined, despite relatively stable total leaf nitrogen. These results suggest that mature leaves undergo selective protein retooling under prolonged sink demand, constraining CO{square} fixation while maintaining C export. Overall, this study revealed that under strong combined N and C sink demands, mature citrus leaves function primarily as regulated carbon conduits rather than dynamically upregulating photosynthesis, providing new insight into source-sink coordination in woody perennial species. HighlightCitrus flush growth shows that mature leaves suppress photosynthesis through stomatal and biochemical regulation while reallocating carbon and nitrogen to support new shoot development, challenging classic source-sink theory.

11
How tree diversity and ectomycorrhizal dominance affect biomass allocation of mixed deciduous forests

Ritter, A.; Yaffar, D.; Meier, I. C.

2026-01-30 ecology 10.64898/2026.01.29.702198 medRxiv
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Biomass and surface area allocation affect resource uptake and carbon (C) residence time in forests, but the influence of tree diversity on allocation remains poorly understood. Moreover, mycorrhizal associations can alter this relationship, which has been rarely tested in mature forests. We investigated the role of both the proportion of ectomycorrhizal (ECM) trees and tree diversity on tree biomass and surface area allocation across a dual gradient of tree diversity (0 - 1.68 Shannon diversity) and ECM dominance (0 - 100 %) in a mixed deciduous forest area in Central Germany. We found that the two gradients affected tree biomass and surface area differently and mostly independently. Tree diversity had no significant effect on biomass or surface area in the investigated forest area, but increased the spatial variability of the leaf area index (LAI) from 21 % to 40 %. In contrast, a higher proportion of ECM trees was associated with an increase in fruit biomass (from 10 to 141 g m-2) and LAI (from 4 to 7 m2 m-2). Although tree diversity and the portion of ECM produced similar parsimonious models for explaining belowground biomass and surface area, neither showed a significant direct effect. Notably, their interaction enhanced the spatial variability of fine root biomass and root surface area; that is, forests with high diversity and a greater proportion of ECM trees exhibited a more heterogeneous distribution of fine roots. Allocation to fine root biomass appeared independent of tree diversity and the proportion of ECM trees, being influenced primarily by stand structure, with higher allocations observed in stands with lower stem basal area. We conclude that biomass allocation in this Central European Forest, where resource availability is relatively uniform, is primarily productivity-driven. A comparison of the biotic influences shows that ECM trees have a stronger control on aboveground surface area and fruit biomass than tree diversity, which may contribute to the ability of dominant ECM trees, such as European beech, to outcompete light competitors, but also puts temperate ECM forests at risk of physiological failures in increasingly drier future conditions.

12
Mechanical and Growth Anisotropy in Chara corallina: Challenging Green's Hypothesis

Kong, W.; Mosciatti Jofre, A.; Boulanger, J.; Marrelec, G.; Savy, T.; Couturier, E.

2026-02-11 plant biology 10.64898/2026.02.09.704413 medRxiv
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Paul Green hypothesized that growth anisotropy of plant cylindrical organs could be controlled by cell-wall elastic strain. The present study aimed to challenge this hypothesis through a robust experimental and analytical framework. By combining live-cell imaging of C. corallina internodal cells with controlled turgor pressure manipulation, we simultaneously measured, for the first time, both the growth strain rate tensor and the elastic compliance tensor derived from multiaxial mechanical testing in the same cell. Under Greens hypothesis, a significant correlation should be observed between the two tensors in all directions. Our results revealed a moderate yet significant correlation between multiaxial elastic compliances and growth strain rates most pronounced in the axial direction. The ratio of axial-to-radial elastic compliance was significantly correlated with the ratio of radial-to-axial growth strain rates. In contrast, other quantities, such as the radial compliance components or the orientations of the two tensors relative to the cell axis showed no significant correlation. Furthermore the growth strain rate tensor was strongly age-dependent in both magnitude and orientation, unlike the elastic compliance. Finally, analysis of intra-tensor variability revealed that axial and radial components were strongly correlated for both tensors, with a lowered correlation in the principal axis decomposition.

13
Drowning in a sandy ocean: Epiarenic growth of Tillandsia in the hyperarid Atacama Desert

Schweikert, R.; Stein, R. E.; Bogs, N.; Bubenzer, O.; Del Rio, C.; Harpke, D.; May, S. M.; Siegmund, A.; Stoll, A.; Quandt, D.; Koch, M. A.

2026-02-24 plant biology 10.64898/2026.02.23.707457 medRxiv
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The Atacama Desert hosts a unique ecosystem formed by the sand-dwelling Tillandsia landbeckii, which extends over hundreds of square kilometers. This vegetation relies primarily on fog as its main water source; however, aeolian sand also plays a crucial role in the long-term persistence of both the species and the overall plant community. The terrain is sloped and exposed to the prevailing wind direction. Tillandsia forms regular banding patterns oriented orthogonally to these landscape features. In this study, we aim to elucidate the abiotic-biotic interactions between sand properties and vegetation characteristics through a comparative approach. Three populations - Caldera, Oyarbide and Arica -, each spanning several square kilometers in the southern, central, and northern regions of the Chilean Atacama Desert, were selected to compare wind regimes, terrain structure, sand and substrate properties, and vegetation structure in order to identify common principles that maintain vegetation integrity. Data were collected from six climate stations, 1,246 substrate samples, population genomic data from 718 individuals, as well as satellite imagery and digital terrain models. Our findings demonstrate that regional wind systems transport sand from distant source areas, while near the ground, Tillandsia vegetation reduces wind velocity and traps sand, leading to the formation of moderately sorted sandy substrates that are similar across all three populations. Sites lacking or containing dead Tillandsia individuals often differ significantly in substrate characteristics. Genetic analyses indicate that Tillandsia populations exhibit strong spatial structure albeit recruiting high genetic diversity and an excess of heterozygosity, reflecting adaptation to the dynamic environmental conditions. We conclude that sand represents an essential component of this ecosystem, while Tillandsia, as the dominant biotic factor, actively shapes and maintains this distinctive desert environment. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=133 SRC="FIGDIR/small/707457v2_ufig1.gif" ALT="Figure 1"> View larger version (66K): org.highwire.dtl.DTLVardef@1d5a9d3org.highwire.dtl.DTLVardef@8067deorg.highwire.dtl.DTLVardef@23470forg.highwire.dtl.DTLVardef@e2ae1_HPS_FORMAT_FIGEXP M_FIG C_FIG Generated based on own drawings and iterative improvements using ChatGPT while providing own peer-reviewed research contributions as input and baseline information (MAK). Short summaryWe exemplify unimodal regional wind systems facilitating sand transport toward Tillandsiales. Tillandsiales show a low-energy wind system allowing sand accumulation of predominant grain sizes available at each site. Thereby Tillandsia landbeckii modifies and maintains its own microenvironment. Genomic data reveal high clonality and excess of heterozygosity promoting fitness in a hyperarid environment, and abiotic factors drive the selection of diverse and adaptive Tillandsia phenotypes.

14
Limited predictability of tree-level responses to drought across European forests

Rodriguez Hernandez, D. I.; Fischer, F. J.; O'Brien, D.; De Kauwe, M.; Wang, B.; Bouriaud, O.; Jucker, T.

2026-02-28 ecology 10.64898/2026.02.26.708208 medRxiv
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Climate change is increasing the frequency, duration and severity of extreme events such as heatwaves and droughts, pushing trees near or beyond their ecophysiological limits. Understanding what governs variability in how trees respond to drought - such as intrinsic factors related to their size, age, and species, or extrinsic factors shaped by their local competitive environment - is critical for predicting long-term forest resilience to climate change and developing climate-smart forest management strategies. Here, we use tree ring data from 2909 trees belonging to sixteen species distributed across Europes major forest types to comprehensively assess what factors contribute most to a trees ability to withstand and recover from extreme drought events. We found that trees with larger living crowns generally exhibited higher post-drought growth recovery and resilience, while trees exposed to lower drought intensities showed greater resistance. Conversely, neither the density nor the diversity of a trees local competitive neighbourhood had any clear influence on its response to drought. More generally, we found that our ability to predict whether a tree would exhibit resilience to drought was low (R2 = 13-21) and was largely driven by species-specific responses and topographic variation across forest types, rather than by tree- and stand-level attributes. These findings highlight that drought responses are inherently complex and strongly influenced by forest type and by heterogeneous responses among species. Integrating tree-ring, physiological, and remote-sensing data with mechanistic models represents a promising avenue for improving forecasts of future forest resilience to climate change.

15
Variance in Calvin-Benson cycle intermediate levels between closely-related species in the tomato clade

Clapero, V.; Arrivault, S.; Stitt, M.

2026-03-03 plant biology 10.64898/2026.02.28.708697 medRxiv
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Published studies have reported species-variance between profiles of Calvin-Benson cycle (CBC) intermediates, not only between C4 species and C3 species, but also within C3 species (Arrivault et al., 2019, Borghi et al. 2019). It was proposed that this variance reflects lineage-dependent changes in the balance between different reactions, or poising, of the CBC. These earlier studies investigated phylogenetically-unrelated C3 species. In the current study, CBC intermediates were profiled in five closely-related species from Solanum sect. lycopersicon subsect. Lycopersicum. The levels of individual CBC intermediates showed many significant differences. In a principal component analysis, whilst three species (Solanum lycopersicum, Solanum cheesmaniae, Solanum neorickii) overlapped, Solanum pimpinellifolium and especially Solanum pennellii grouped separately, and were at opposing ends of the distribution. When combined with published data, whilst the separation between Solanum species was retained, they formed a group that was separated from five other C3 species, as well as two C4 species. It is discussed that the observed variation in CBC metabolites profiles within Solanum, together with their separation from other C3 species, supports the idea that CBC evolution is shaped both by phylogenetic relatedness and lineage-specific adaptation. HighlightVariance of intermediate levels points to poising of the Calvin-Benson cycle varying between closely-related species in the tomato clade Solanum sect. lycopersicon subsect. Lycopersicum

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Domestication reduces drought tolerance in watermelon through loss of root plasticity traits

Shemer, O. E.; Bloom, Z. M.; Gal, S.; Peleg, G.; Cochavi, A.

2026-02-12 plant biology 10.64898/2026.02.11.705227 medRxiv
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Wild plants, particularly those native to xeric environments, are highly adapted to survive under harsh conditions. These adaptive strategies primarily ensure the successful transfer of genetic material to subsequent generations, often independently of fruit size or quality. In contrast, more than 10,000 years of domestication have shifted plant strategies away from survival-oriented traits toward increase in yield and fruit quality. In this study, we characterized both shared and divergent physiological traits contributing to drought tolerance in wild and domesticated watermelon genotypes. Specifically, we compared above- and belowground responses to water limitation in desert watermelon (Citrullus colocynthis) versus these in a watermelon cultivar (Citrullus lanatus). While aboveground responses to water scarcity were largely similar between the two genotypes, pronounced differences emerged belowground. Root biomass and surface area in the cultivated watermelon were predominantly concentrated in the upper soil layers. In contrast, desert watermelon displayed substantial root system plasticity under drought conditions. Although total root biomass remained largely distributed in the upper soil layers, root surface area shifted toward deeper soil layers, indicating enhanced water acquisition from deeper soil layers without additional biomass investment. These findings suggest that domesticated watermelon, despite originating from desert-adapted ancestors, has largely lost the capacity for dynamic root system adjustment in response to spatial and temporal variation in soil water availability.

17
Characterizing key osmolytes and osmoprotectants in drought-stressed Scotch pine: a differential approach

Kartashov, A. V.; Zlobin, I. E.; Ivanov, Y. V.; Ivanova, A. I.; Orlova, A.; Frolova, N.; Soboleva, A.; Silinskaya, S.; Bilova, T.; Frolov, A.; Kuznetsov, V. V.

2026-03-25 plant biology 10.64898/2026.03.23.713677 medRxiv
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During drought, numerous compounds accumulate in plant tissues, but their physiological roles remain unclear - they may function as osmolytes, osmoprotectants, or merely arise as by-products of stress-induced metabolic shifts. We developed an experimental approach to link accumulation patterns with specific functions, using Scots pine (Pinus sylvestris L.) saplings subjected to water deprivation and subsequent rewatering as a model system. We monitored changes in relative water content (RWC) and osmotic adjustment dynamics, employed untargeted primary metabolite profiling for preliminary screening of compounds correlated with water status, and performed quantitative GC-MS and LC-MS analyses of selected metabolites. Major inorganic cations (K, Ca{superscript 2}, Mg{superscript 2}) were also quantified to assess their potential roles. Our results revealed that tryptophan, valine, and lysine - though generally present in low abundance - exhibited selective accumulation under severely reduced RWC ([≤] 70%), suggesting their involvement as osmoprotectants. Major organic acids, particularly shikimic acid, showed trends consistent with osmotic adjustment. Notably, neither sucrose nor inorganic cations appeared to function as primary osmolytes in this context. The proposed approach offers a viable strategy for identifying compounds involved in plant adaptation to water deficit, with potential applications in breeding programs aimed at improving drought tolerance. HighlightsAn approach to identify osmolytes and osmoprotectants was implemented Accumulation of Trp, Val and Lys was consistent with their role in osmoprotection Osmotic adjustment relied predominantly on organic acids than on inorganic ions Monosaccharides but not sucrose correlates with changes in needle water status

18
Three-dimensional nano-imaging reveals subtle changes in xylem structure in CAD-deficient sorghum

Manoel, L. B.; Fernandes, F. F.; Monteiro, E.; Lima, L. G. A. d.; Kalile, T. A.; Meneau, F.; Cesarino, I.; Polo, C. C.

2026-02-23 plant biology 10.64898/2026.02.21.707186 medRxiv
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Lignin plays a central role in the formation and function of secondary cell walls in vascular plants. However, the structural consequences of lignin modification for cell wall properties and cellular function in grasses remain poorly understood. Here, we investigated how cinnamyl alcohol dehydrogenase (CAD) deficiency alters vascular cell architecture in Sorghum bicolor, using the brown midrib-6 (bmr6) mutant as a model system. Biochemical and histochemical analyses confirmed altered lignin chemistry in bmr6, including increased incorporation of hydroxycinnamaldehyde residues and reduced tricin levels. We applied ptychographic X-ray computed tomography (PXCT) to quantify the cell wall geometry, in three dimensions, at nanometer-scale resolution. PXCT enabled measurements of wall thickness distribution and lumen shape along tracheary elements. Analyses revealed no significant differences in wall thickness between wild-type and bmr6 plants. However, three-dimensional morphometric descriptors indicated reduced lumen convexity in bmr6, suggesting localized modifications not detectable by conventional two-dimensional imaging. Water flow numerical simulations through PXCT-derived images indicated reduced vessel permeability and simulated hydraulic conductivity in bmr6, suggesting that subtle geometric changes may influence performance. These findings highlight the value of three-dimensional imaging for resolving cell wall organization and provide new insight into the architectural resilience of grass xylem in response to targeted lignin modification. HighlightThree-dimensional X-ray nano-imaging reveals alterations in the cell wall architecture that affect simulated hydraulic performance under reduced CAD activity in sorghum.

19
Genetically based variation in fitness and carbon assimilation among bur oak populations

Rea, L. M. S.; Ostrowsky, L.; Mohn, R.; Garner, M.; Lapadat, C.; McCarthy, H. R.; Hipp, A. L.; Cavender-Bares, J.

2026-03-11 ecology 10.1101/2024.10.30.620350 medRxiv
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Ongoing climate change will negatively impact tree populations unless they are able to acclimate to the changes in their local environment. Effective planning for climate adaptation management requires an understanding of the current state of local adaptation and physiological performance to assess whether populations are at risk of local extinction, to determine if seed movement is appropriate, and to select appropriate seed sources if intervention is needed. We established a new reciprocal transplant experiment (ACE, Adaptation to Climate and Environment) across a latitudinal gradient in North America to examine the impacts of warming on three bur oak (Quercus macrocarpa) populations across much of the species range. We established common gardens in Minnesota, Illinois, and Oklahoma with seedlings grown from seeds collected within 50 km of each of those locations from a total of sixty maternal families. We aimed to 1) assess local adaptation in each of the populations using survival and size as fitness metrics, and 2) evaluate physiological responses to different environments along the latitudinal gradient. We found that northern populations are maladapted to hotter climates as evidenced by their low survival, growth, and photosynthetic rates in the warmest common garden. The southernmost population had the highest survival rate, growth rate, and fitness of the three populations in the southernmost garden, providing evidence for local adaptation to the warmest site. However, conditions in the middle garden resulted in the highest fitness and best physiological performance for all populations. Growth and survival were correlated in the middle garden but were decoupled in the northern and southern gardens. This decoupling is likely due to stress associated with more extreme climates at the ends of the gradient that led to greater resource allocation to survival than to growth. Our results suggest that southern seed sources may perform well in warmer conditions in the north brought on by climate change, which has important implications for managers assisting broadly ranged tree species in adapting to climate change.

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Dynamic yield responses of chickpea (Cicer arietinum) to terminal drought are accompanied by changes in grain composition

Hopgood, P.; Buck, S.; Bain, M.

2026-03-02 plant biology 10.64898/2026.02.26.708401 medRxiv
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Chickpea is predominantly grown under rainfed conditions in regions where terminal drought limits yield, yet little is known about how this stress influences both vegetative allocation and reproductive dynamics leading to altered grain composition. We imposed a controlled terminal drought, with a rewatered treatment group, on three Desi cultivars (ICC4958, ICC1882 and CBA Captain) reported to have contrasting drought tolerance, quantifying vegetative biomass, reproductive node productivity across developmental regions and grain macronutrient composition. Under drought, vegetative responses reflected genotype-specific resource partitioning strategies particularly evident in severe root degradation and increase stem dry matter content that was only partially alleviated in rewatered plants. Reproductive outcomes were strongly influenced by developmental stage at the time of stress, with increased pod abortion observed particularly at nodes initiating seed development under drought treatment. Grain composition of seeds filled under drought was significantly altered by stress, with increased protein concentration and decreased starch content under both Drought and Recovery treatments independent of cultivar, likely due to water limitation at crucial filling stages. These findings demonstrate that the developmental timing of terminal drought interacts with cultivar growth strategy to influence pod production and grain nutritional quality in chickpea. HighlightThe developmental timing of terminal drought interacts with cultivar-dependent growth strategies to influence pod productivity and grain nutritional quality in chickpea.